PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g035910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 364aa    MW: 41214.2 Da    PI: 5.8661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g035910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17172268296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k l++sdv+++gr+vlpk+ ae    +++ +e++ l ++d  s +sW++k+++  ++ks++yvl+ ++ eFv++ng+++gD+++++  ++++++
  Csa14g035910.1 172 VKLLKNSDVGALGRIVLPKREAEGKlpKLSDKEGIVLEMRDvFSLQSWSFKYKFwsNNKSRMYVLE-NTGEFVRQNGVESGDTLTIY--EDESKN 263
                     6899******************99999777778999999995566*******99888888889999.********************..557777 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ v
  Csa14g035910.1 264 LYFAV 268
                     77765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-20168274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-17170270IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-18170269No hitNo description
PROSITE profilePS508639.812171272IPR003340B3 DNA binding domain
SMARTSM010193.7E-17171272IPR003340B3 DNA binding domain
PfamPF023622.7E-13172267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDNFFPFSSS NANSVQEFAM DANNNLSHLT TMPTYDHHQA EPHHLLYSYP VEQMAAVMNP  60
HQPLYSSDAY PQIPVSQTGS EFCSLVSNPN PCLRPERGGL FLDPTKMARI NRKNAMIRSR  120
NNSSPNSSPD EVVDSKRQVM MLNMKNNVQI PERKDHYPHS TFDNKKLRVL CVKLLKNSDV  180
GALGRIVLPK REAEGKLPKL SDKEGIVLEM RDVFSLQSWS FKYKFWSNNK SRMYVLENTG  240
EFVRQNGVES GDTLTIYEDE SKNLYFAVTK PGRQNGGRGV ESMKVNEMNH YEEIMYDFMP  300
GDEEEASIAM LIGNLNDHYP NPNDLMGLTI DHQHHQAASS LPSVDYAHVG SLDDQVSFDD  360
IGW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460616.10.0PREDICTED: B3 domain-containing transcription factor LEC2 isoform X1
SwissprotQ1PFR70.0LEC2_ARATH; B3 domain-containing transcription factor LEC2
TrEMBLR0I4Q70.0R0I4Q7_9BRAS; Uncharacterized protein
STRINGAT1G28300.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-170B3 family protein